Genetic analysis of the fungicide resistance in Fusarium oxysporum associated to Vanilla planifolia
Abstract
Vanilla planifolia is attacked by the fungus F. oxysporum f. sp. vanillae. Since there are no resistant genotypes available to producers, they opt for the use of synthetic fungicides to control the disease, however, there is no information on a possible resistance of the pathogen to these commercial fungicides. The goal of the work was to analyze the response of F. oxysporum strains, pathogenic (nine) and non-pathogenic (three) of V. planifolia, to three fungicides of the benzimidazole family and to chlorothalonil, as well as the genetic bases by studying the target proteins of these active ingredients, ?-tubulin and GPDH. It was observed that the 12 strains studied were susceptible to the fungicides benomyl and carbendazim, while 11 of them were resistant to thiophanate methyl and nine to chlorothalonil. No relationship was found between the pathogenic character or the origin of the strains and the susceptibility to fungicides. It was found that resistance to thiophanate methyl is not conferred by a point mutation of the ?-tubulin coding sequence, as previously hypothesized; apparently, it could be more related to the absence of protein motifs. No relationship was observed between variation in the gene GPDH with the resistance or susceptibility of the strains.
Keywords
Full Text:
PDFReferences
Adame-García J, Trigos-Landa A, Iglesias-Andreu LG, Flores-Estevez N and Luna-Rodríguez M. 2011. Isozymic and pathogenic variations of Fusarium spp. associated with vanilla stem and root rotting. Tropical and Subtropical Agroecosystems 13:299-306. https://www.revista.ccba.uady.mx/ojs/index.php/TSA/article/view/1330/663
Adame-García J, Rodríguez-Guerra R, Iglesias-Andreu LG, Ramos-Prado JM and Luna-Rodríguez M. 2015. Molecular identification and pathogenic variation of Fusarium species isolated from Vanilla planifolia in Papantla Mexico. Botanical Sciences 93:669–678. https://doi.org/10.17129/botsci.142
Adame-García J, Flores-de la Rosa FR, Ricaño-Rodríguez J and Luna-Rodríguez M. 2016a. Adequacy of a protocol for amplification of EF-1? gene of Fusarium oxysporum f. sp. vanillae. ARPN Journal of Agricultural and Biological Science 11:236–241. http://www.arpnjournals.org/jabs/research_papers/rp_2016/jabs_0616_804.pdf
Adame-García J, Luna-Rodríguez M and Iglesias-Andreu LG. 2016b. Vanilla rhizobacteria as antagonists against Fusarium oxysporum f. sp. vanillae. International Journal of Agriculture and Biology 18:23–30. https://doi.org/10.17957/IJAB/15.0053
Amini J and Sidovich D. 2010. The effects of fungicides on Fusarium oxysporum f. sp. lycopersici associated with Fusarium wilt of tomato. Journal of Plant Protection Research 50:172–178. http://www.plantprotection.pl/pdf-91523-25801?filename=The%20effects%20of%20fungicides.pdf
Arie T. 2019. Fusarium diseases of cultivated plants, control, diagnosis, and molecular genetic studies. Journal of Pesticide Sciences 44(4): 275 – 281. https://doi.org/10.1584/jpestics.J19-03
Ba?maga M, Wyszkowska J and Kucharski J. 2018. The influence of chlorothalonil on the activity of soil microorganisms and enzymes. Ecotoxicology 27. https://doi.org/10.1007/s10646-018-1968-7
Casillas-Isiordia R, Flores-de la Rosa FR, Can-Chulim Á, Luna Esquivel G, Rodríguez-Guerra R, Ramírez-Guerrero LG, Luna-Rodríguez M and Aguirre Beltrán G. 2017. Fusarium sp. associated with Vanilla sp. rot in Nayarit, Mexico. ARPN Journal of Agricultural and Biological Science. 12:43–50. http://www.arpnjournals.org/jabs/research_papers/rp_2017/jabs_0217_844.pdf
Chen Z, Gao T, Liang S, Liu K, Zhou M and Chen C. 2014. Molecular mechanism of resistance of Fusarium fujikuroi to benzimidazole fungicides. FEMS Microbiology Letters 357:77–84. https://doi.org/10.1111/1574-6968.12504
Chung WH, Chung WC, Ting PF, Ru CC, Huang HC and Huang JW. 2009. Nature of resistance to methyl benzimidazole carbamate fungicides in Fusarium oxysporum f. sp. lilii and F. oxysporum f. sp. gladioli in Taiwan. Journal of Phytopathology 157:742–747. https://doi.org/10.1111/j.1439-0434.2009.01545.x
Dahal N and Shrestha R. 2018. Evaluation of efficacy of fungicides against Fusarium oxysporum f. sp. lentis in vitro at Lamjung, Nepal. Journal of the Institute of Agriculture and Animal Science 35:105–112. https://doi.org/10.3126/jiaas.v35i1.22520
dos Santos Vieira WA, Guerreiro Lima W, Souza Nascimento E, Michereff S, Doyle VA and Saraiva Camara M. 2017. Thiophanate-methyl resistance and fitness components of Colletotrichum musae isolates from banana in Brazil. Plant Disease 101:1659–1665. https://doi.org/10.1094/PDIS-11-16-1594-RE
Dowling ME, Hu MJ and Schnabel G. 2017. Fungicide resistance in Botrytis fragariae and species prevalence in the Mid-Atlantic United States. Plant Disease 102:964–969. https://doi.org/10.1094/PDIS-10-17-1615-RE
Duan Y, Zhang X, Ge C, Wang Y, Cao J, Jia X, Wang J and Zhou M. 2014. Development and application of loop-mediated isothermal amplification for detection of the F167Y mutation of carbendazim-resistant isolates in Fusarium graminearum. Scientific Reports 4:7094 https://doi.org/10.1038/srep07094
Flores-de la Rosa FR, De Luna E, Adame-García J, Iglesias-Andreu LG and Luna-Rodríguez M. 2018. Phylogenetic position and nucleotide diversity of Fusarium oxysporum f. sp. vanillae worldwide based on translation elongation factor 1? sequences. Plant Pathology 67:1278–1285. https://doi.org/10.1111/ppa.12847
Hernández-Hernández J. 2019. Mexican vanilla production. Pp: 3–38. In: Havkin-Frenkel D and Belanger FC (eds.). Handbook of Vanilla Science and Technology. Second edition. Hoboken, Wiley Blackwell, New Jersey, USA. 500p https://www.wiley.com/en-us/Handbook+of+Vanilla+Science+and+Technology%2C+2nd+Edition-p-9781119377276
Hobbelen P, Paveley N and Bosch F. 2011. Delaying selection for fungicide insensitivity by mixing fungicides at a low and high risk of resistance development: a modeling analysis. Phytopathology 101:1224–1233. https://doi.org/10.1094/PHYTO-10-10-0290
Koyyappurath S, Conejero G, Dijoux JB, Lapeyre-Montes F, Jade K, Chiroleu F, Gatineau F, Verdeil JL, Besse P and Grisoni M. 2015. Differential responses of vanilla accessions to root rot and colonization by Fusarium oxysporum f. sp. radicis-vanillae. Frontiers in Plant Science 6: 1125. https://doi.org/10.3389/fpls.2015.01125
Kumar S, Stecher G, Li M, Knyaz C and Tamura K. 2018. MEGA X: Molecular evolutionary genetics analysis across computing platforms. Molecular biology and evolution 35(6): 1547-1549. https://doi.org/10.1093/molbev/msy096
Lecomte C, Edel-Hermann V, Cannesan MA, Gautheron N, Langlois A, Alabouvette C, Robert F and Steinberg C. 2016. Fusarium oxysporum f. sp. cyclaminis: underestimated genetic diversity. European Journal of Plant Pathology 145(2): 421–431. https://doi.org/10.1007/s10658-016-0856-3
Long JW and Siegel MR. 1975. Mechanism of action and fate of the fungicide chlorothalonil (2,4,5,6-Tetrachloroisophthalonitrile) in biological systems. Chemico-biological Interactions 10(6): 383-394. https://doi.org/10.1016/0009-2797(75)90069-1
Lubinsky P, Bory S, Hernández-Hernández J, Kim SC and Gómez-Pompa A. 2008. Origins and dispersal of cultivated vanilla (Vanilla planifolia Jacks. [Orchidaceae]). Economic Botany 62(2): 127–138. https://doi.org/10.1007/s12231-008-9014-y
Nosratabadi M, Kachuei R, Rezaie S and Harchegani AB. 2018. Beta-tubulin gene in the differentiation of Fusarium species by PCR-RFLP analysis. Le Infezioni in Medicina, 26(1): 52-60. https://www.infezmed.it/media/journal/Vol_26_1_2018_7.pdf
Petkar A, Langston DB, Buck JW, Stevenson KL and Ji P. 2017. Sensitivity of Fusarium oxysporum f. sp. niveum to prothioconazole and thiophanate-methyl and gene mutation conferring resistance to thiophanate-methyl. Plant Disease 101:366–371. https://doi.org/10.1094/PDIS-09-16-1236-RE
Pinaria A, Liew ECY and Burgess L. 2010. Fusarium species associated with vanilla stem rot in Indonesia. Australasian Plant Pathology 39:176–183. https://doi.org/10.1071/AP09079
Steinberg G and Gurr SJ. 2020. Fungi, fungicide discovery and global food security. Fungal Genetics and Biology 144: 103476. https://doi.org/10.1016/j.fgb.2020.103476
Suga H, Nakajima T, Kageyama K and Hyakumachi M. 2011. The genetic profile and molecular diagnosis of thiophanate-methyl resistant strains of Fusarium asiaticum in Japan. Fungal Biology 115:1244–1250. https://doi.org/10.1016/j.funbio.2011.08.009
Untergasser A, Nijveen H, Rao X, Bisseling T, Geurts R and Leunissen JA. 2007. Primer3Plus, an enhanced web interface to Primer3. Nucleid Acid Research 35. https://doi.org/10.1093/nar/gkm306
Vela-Corcía D, Romero D, de Vicente A and Pérez-García A. 2018. Analysis of ?-tubulin-carbendazim interaction reveals that binding site for MBC fungicides does not include residues involved in fungicide resistance. Scientific Reports 8:7161. https://doi.org/10.1038/s41598-018-25336-5
Yang LN, He MH, Ouyang HB, Zhu W, Pan ZC, Sui QJ, Shang LP and Zhan J. 2019. Cross-resistance of the pathogenic fungus Alternaria alternata to fungicides with different modes of action. BMC Microbiology 19:205. https://doi.org/10.1186/s12866-019-1574-8
Zhang X, Chen X, Jiang J, Yu M, Yin Y and Ma Z. 2015. The tubulin cofactor A is involved in hyphal growth, conidiation and cold sensitivity in Fusarium asiaticum. BMC Microbiology 15:35. https://doi.org/10.1186/s12866-015-0374-z
Zhou Y, Xu J, Zhu Y, Duan Y and Zhou M. 2016. Mechanism of action of the benzimidazole fungicide on Fusarium graminearum: Interfering with polymerization of monomeric tubulin but not polymerized microtubule. Phytopathology 106(8):807–813. https://doi.org/10.1094/PHYTO-08-15-0186-R
Zhu Y, Liang X, Li Y, Duan Y, Zheng Z, Wang J and Zhou M. 2018. F240 of ? 2- Tubulin explains why Fusarium graminearum is less sensitive to carbendazim than Botrytis cinerea. Phytopathology 108:352–361. https://doi.org/10.1094/PHYTO-09-17-0295-R
DOI: http://dx.doi.org/10.18781/R.MEX.FIT.2203-3
Refbacks
- There are currently no refbacks.